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1

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Optimal Client Recommendation for Market Makers in Illiquid Financial Products

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 941 KB

english, 2017

2

Interpretability of machine learningâbased prediction models in healthcare

Stiglic, Gregor, Kocbek, Primoz, Fijacko, Nino, Zitnik, Marinka, Verbert, Katrien, Cilar, Leona

Journal:

Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery

Year:

2020

File:

PDF, 1.77 MB

2020

3

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 ||

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 41.45 MB

english, 2017

4

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Modeling the Temporal Nature of Human Behavior for Demographics Prediction

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 892 KB

english, 2017

5

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Session-Based Fraud Detection in Online E-Commerce Transactions Using Recurrent Neural Networks

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 737 KB

english, 2017

6

Using sentiment analysis to improve business operations

Zitnik, Marinka

Journal:

XRDS Crossroads The ACM Magazine for Students

Year:

2012

Language:

english

File:

PDF, 1.24 MB

english, 2012

7

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || TF Boosted Trees: A Scalable TensorFlow Based Framework for Gradient Boosting

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 355 KB

english, 2017

8

Cross-type Biomedical Named Entity Recognition with Deep Multi-Task Learning

Wang, Xuan, Zhang, Yu, Ren, Xiang, Zhang, Yuhao, Zitnik, Marinka, Shang, Jingbo, Langlotz, Curtis, Han, Jiawei, Wren, Jonathan

Journal:

Year:

2018

Language:

english

File:

PDF, 512 KB

english, 2018

9

Predicting multicellular function through multi-layer tissue networks

Zitnik, Marinka, Leskovec, Jure

Journal:

Year:

2017

Language:

english

File:

PDF, 1.37 MB

english, 2017

10

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Process-Based Modeling and Design of Dynamical Systems

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 176 KB

english, 2017

11

Zero-knowledge proofs

Zitnik, Marinka

Journal:

XRDS Crossroads The ACM Magazine for Students

Year:

2013

Language:

english

File:

PDF, 133 KB

english, 2013

12

Modeling polypharmacy side effects with graph convolutional networks

Zitnik, Marinka, Agrawal, Monica, Leskovec, Jure

Journal:

Year:

2018

Language:

english

File:

PDF, 730 KB

english, 2018

13

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || TrAnET: Tracking and Analyzing the Evolution of Topics in Information Networks

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 567 KB

english, 2017

14

Iterative numerical methods for nonlinear systems

Zitnik, Marinka

Journal:

XRDS Crossroads The ACM Magazine for Students

Year:

2012

Language:

english

File:

PDF, 1.60 MB

english, 2012

15

Data Fusion by Matrix Factorization

Zitnik, Marinka, Zupan, Blaz

Journal:

IEEE Transactions on Pattern Analysis and Machine Intelligence

Year:

2015

Language:

english

File:

PDF, 964 KB

english, 2015

16

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Analyzing Granger Causality in Climate Data with Time Series Classification Methods

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 497 KB

english, 2017

17

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Structural Semantic Models for Automatic Analysis of Urban Areas

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 7.59 MB

english, 2017

18

Scalable non-negative matrix tri-factorization

Čopar, Andrej, žitnik, Marinka, Zupan, Blaž

Journal:

Year:

2017

Language:

english

File:

PDF, 985 KB

english, 2017

19

Evolution of resilience in protein interactomes across the tree of life

Zitnik, Marinka, Sosič, Rok, Feldman, Marcus W., Leskovec, Jure

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 1.59 MB

english, 2019

20

Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins

Stražar, Martin, Žitnik, Marinka, Zupan, Blaž, Ule, Jernej, Curk, Tomaž

Journal:

Year:

2016

Language:

english

File:

PDF, 655 KB

english, 2016

21

Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion

Žitnik, Marinka, Zupan, Blaž

Journal:

Journal of Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.07 MB

english, 2015

22

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Image Representation, Annotation and Retrieval with Predictive Clustering Trees

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 102 KB

english, 2017

23

Gene Prioritization by Compressive Data Fusion and Chaining

Žitnik, Marinka, Nam, Edward A., Dinh, Christopher, Kuspa, Adam, Shaulsky, Gad, Zupan, Blaž, Beerenwinkel, Niko

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

24

Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities

Zitnik, Marinka, Nguyen, Francis, Wang, Bo, Leskovec, Jure, Goldenberg, Anna, Hoffman, Michael M.

Journal:

Information Fusion

Year:

2018

Language:

english

File:

PDF, 6.17 MB

english, 2018

25

Discovering disease-disease associations by fusing systems-level molecular data

Žitnik, Marinka, Janjić, Vuk, Larminie, Chris, Zupan, Blaž, Pržulj, Nataša

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 668 KB

english, 2013

26

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (4 – 8 January 2016)] Biocomputing 2016 - COLLECTIVE PAIRWISE CLASSIFICATION FOR MULTI-WAY ANALYSIS OF DISEASE AND DRUG DATA

ZITNIK, MARINKA, ZUPAN, BLAZ

Language:

english

File:

PDF, 2.52 MB

english

27

A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family

Carreras-Puigvert, Jordi, Zitnik, Marinka, Jemth, Ann-Sofie, Carter, Megan, Unterlass, Judith E., Hallström, Björn, Loseva, Olga, Karem, Zhir, Calderón-Montaño, José Manuel, Lindskog, Cecilia, Edqvist

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 2.25 MB

english, 2017

28

Network enhancement as a general method to denoise weighted biological networks

Wang, Bo, Pourshafeie, Armin, Zitnik, Marinka, Zhu, Junjie, Bustamante, Carlos D., Batzoglou, Serafim, Leskovec, Jure

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.14 MB

english, 2018

29

[ACM Press the 24th ACM SIGKDD International Conference - London, United Kingdom (2018.08.19-2018.08.23)] Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining - KDD '18 - Learning Structural Node Embeddings via Diffusion Wavelets

Donnat, Claire, Zitnik, Marinka, Hallac, David, Leskovec, Jure

Year:

2018

Language:

english

File:

PDF, 2.10 MB

english, 2018

30

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || DC-Prophet: Predicting Catastrophic Machine Failures in DataCenters

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

31

SkipGNN: predicting molecular interactions with skip-graph networks

Huang, Kexin, Xiao, Cao, Glass, Lucas M., Zitnik, Marinka, Sun, Jimeng

Journal:

Scientific Reports

Year:

2020

File:

PDF, 2.84 MB

2020

32

Survival regression by data fusion

Žitnik, Marinka, Zupan, Blaž

Journal:

Systems Biomedicine

Year:

2014

Language:

english

File:

PDF, 891 KB

english, 2014

33

Efficient sensor placement for environmental monitoring

Zitnik, Marinka

Journal:

XRDS Crossroads The ACM Magazine for Students

Year:

2014

Language:

english

File:

PDF, 1.46 MB

english, 2014

34

Sieve-based relation extraction of gene regulatory networks from biological literature

Slavko Žitnik,Marinka Žitnik,Blaž Zupan,Marko Bajec

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.77 MB

english, 2015

35

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Urban Water Flow and Water Level Prediction Based on Deep Learning

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 2.64 MB

english, 2017

36

DeepPurpose: A Deep Learning Library for Drug-Target Interaction Prediction

Huang, Kexin, Fu, Tianfan, Glass, Lucas M, Zitnik, Marinka, Xiao, Cao, Sun, Jimeng, Wren, Jonathan

Journal:

Year:

2020

File:

PDF, 1.14 MB

2020

37

Exploring data with topological tools

Zitnik, Marinka

Journal:

XRDS Crossroads The ACM Magazine for Students

Year:

2014

Language:

english

File:

PDF, 104 KB

english, 2014

38

Matrix factorization-based data fusion for drug-induced liver injury prediction

Žitnik, Marinka, Zupan, Blaž

Journal:

Systems Biomedicine

Year:

2014

Language:

english

File:

PDF, 512 KB

english, 2014

39

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || SINAS: Suspect Investigation Using Offenders’ Activity Space

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 718 KB

english, 2017

40

Dynamics of news from the New York Times

Zitnik, Marinka

Journal:

XRDS Crossroads The ACM Magazine for Students

Year:

2014

Language:

english

File:

PDF, 281 KB

english, 2014

41

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Taking It for a Test Drive: A Hybrid Spatio-Temporal Model for Wildlife Poaching Prediction Evaluated Through a Controlled Field Test

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 713 KB

english, 2017

42

[ACM Press the 24th ACM SIGKDD International Conference - London, United Kingdom (2018.08.19-2018.08.23)] Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining - KDD '18 - Learning Structural Node Embeddings via Diffusion Wavelets

Donnat, Claire, Zitnik, Marinka, Hallac, David, Leskovec, Jure

Year:

2018

File:

PDF, 2.10 MB

2018

43

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (3 – 7 January 2014)] Biocomputing 2014 - MATRIX FACTORIZATION-BASED DATA FUSION FOR GENE FUNCTION PREDICTION IN BAKER'S YEAST AND SLIME MOLD

ŽITNIK, MARINKA, ZUPAN, BLAŽ

Language:

english

File:

PDF, 1015 KB

english

44

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Activity-Driven Influence Maximization in Social Networks

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 227 KB

english, 2017

45

Matrix function

Zitnik, Marinka

Journal:

XRDS Crossroads The ACM Magazine for Students

Year:

2013

Language:

english

File:

PDF, 119 KB

english, 2013

46

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Generalising Random Forest Parameter Optimisation to Include Stability and Cost

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 605 KB

english, 2017

47

Prioritizing network communities

Zitnik, Marinka, Sosič, Rok, Leskovec, Jure

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 3.01 MB

english, 2018

48

Gene network inference by fusing data from diverse distributions

Žitnik, Marinka, Zupan, Blaž

Journal:

Year:

2015

Language:

english

File:

PDF, 533 KB

english, 2015

49

Jumping across biomedical contexts using compressive data fusion

Zitnik, Marinka, Zupan, Blaz

Journal:

Year:

2016

Language:

english

File:

PDF, 1.41 MB

english, 2016

50

[Lecture Notes in Computer Science] Machine Learning and Knowledge Discovery in Databases Volume 10536 || Event Detection and Summarization Using Phrase Network

Altun, Yasemin, Das, Kamalika, Mielikäinen, Taneli, Malerba, Donato, Stefanowski, Jerzy, Read, Jesse, Žitnik, Marinka, Ceci, Michelangelo, Džeroski, Sašo

Year:

2017

Language:

english

File:

PDF, 320 KB

english, 2017

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